PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi05g12650.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 128aa    MW: 14096.2 Da    PI: 10.9454
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi05g12650.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.84.4e-092970854
                     HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH  8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                     + r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  Vradi05g12650.1 29 AARHRRERISERIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 70
                     5699*****************87.....8****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.4342170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.0E-142280IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.01E-142579IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-132776IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-63070IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.61E-74475No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 128 aa     Download sequence    Send to blast
MQPIHIDPES VKAPKRRNVK ISKDPQSVAA RHRRERISER IRILQRLVPG GTKMDTASML  60
DEAIHYVKFL KTQVQSLERA SANNIRPLVG INAPGIGFPV AMSGSISTAT TPSSNFTPYF  120
PLPNTYD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014500721.14e-88PREDICTED: transcription factor HEC1-like
SwissprotQ9SND42e-38HEC2_ARATH; Transcription factor HEC2
SwissprotQ9FHA73e-38HEC1_ARATH; Transcription factor HEC1
TrEMBLA0A0L9V9426e-75A0A0L9V942_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RAY16e-75A0A0S3RAY1_PHAAN; Uncharacterized protein
STRINGGLYMA04G04190.23e-54(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65134141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50330.11e-33bHLH family protein